WGS of Pectobacterium parmentieri: strain IPO:1955 - SRA

SRX8839031: WGS of Pectobacterium parmentieri: strain IPO:1955
1 ILLUMINA (Illumina HiSeq 2500) run: 4.3M spots, 1.3G bases, 411.4Mb downloads

Design: Libraries for Illumina sequencing were constructed on randomly sheared DNA fragments (Covaris E210) aiming 300 to 500 bp insert size using the NEXTflex ChIP-seq Library prep kit (BIOO Scientific). Library sizes were analyzed on a Bioanalyzer (Agilent) and quantified using Qubit (Life Technologies) equimolar pooled. The library pool was loaded on an Illumina paired-end flowcell for cluster generation using a cBot (illumina). Sequencing was done on an Illumina HiSeq2500 instrument using 125, 7, 125 flow cycles for forward, index and reverse reads respectively

Submitted by: Wageningen Plant Research

Study: Pectobacterium genome sequencing for pangenomics

PRJNA649220 • SRP273944 • All experiments • All runs

show Abstracthide Abstract

Expand the set of available Pectobacterium genomes and the representation of agriculturally relevant strains. The genomes are used for a pangenomic investigation of the genus.

Sample:

SAMN15660320 • SRS7102327 • All experiments • All runs

Organism: Pectobacterium parmentieri

Library:

Name: BPHSRR0000020

Instrument: Illumina HiSeq 2500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 4.3M spots, 1.3G bases, 411.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR12339220	4,257,706	1.3G	411.4Mb	2021-02-02

ID:: 11495397

SRA

Sequence Read Archive

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